Near-infrared (NIR) spectroscopy combined with aquaphotomics shows potential for a rapid, non-invasive approach for detecting subtle biochemical changes in biofluids and agricultural products. By monitoring water molecular structures through water matrix coordinates (WAMACs) and visualizing water absorption spectrum patterns (WASPs) via aquagrams, researchers can identify disease biomarkers, food contaminants, and other analytes with high accuracy. This tutorial introduces the principles, practical workflow, and applications of NIR aquaphotomics for everyday laboratory use.